PhysioVerse Data Finder
PhysioVerse Data Finder
Search and filter classified organoid, spheroid, organ-on-chip, tissue-on-chip, and microphysiological-system studies by metadata and main-variable levels.
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Filter the PhysioVerse classified data table by model system, species, tissue, cell type, application, and ECM. The study list updates with title, year, DOI, authors, corresponding author email, and study type.
Data for this tool were compiled from publications identified through structured searches of the PubMed database using selected keywords related to organoids and organ-on-chip technologies. Records were processed and classified using bibliographic management and data analysis tools. While efforts have been made to ensure accuracy, the database may contain omissions, duplicate records, classification errors, or incomplete metadata. Users are encouraged to consult the original publications and PubMed records for verification. Users can report any flaw through the contact information, and we truly appreciate this feedback.
Filter selections are based on study content and indexed metadata. Some publications may mention several variables that are not necessarily part of the experimental design, and a record may include more than one relevant species, tissue, material, cell type, or reagent context. For example, a study may use human tissue while also describing a rat antibody, which may cause both terms to appear in the classified content. PhysioVerse Data Finder is still growing and will be refined over time. This is one reason for launching PhysioVerse as an open ecosystem, so the community can help improve the data, correct errors, and make the resource stronger for everyone.
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417 studies found
Sequence and chromatin determinants of cell-type-specific transcription factor binding.
Arvey et al.
Impact of Anaerobiosis on Expression of the Iron-Responsive Fur and RyhB Regulons.
Beauchene et al.
Challenges and advances in drug resistance and tolerance in cancer.
Bivona et al.
Inducible POU Class 2 Homeobox 3 Expression in Human Intestinal Organoids as a Model of Human Tuft C
Bomidi et al.
Study on the spatiotemporal regulation of interferon-stimulated genes during Zika virus infection.
Chen et al.
ADAT2-mediated A-to-I tRNA modification promotes oncogenic translation and colorectal cancer progres
Cheng et al.
Widespread Strain-Specific Distinctions in Chromosomal Binding Dynamics of a Highly Conserved Escher
Connolly et al.
Clinical Positioning of the IAP Antagonist Tolinapant (ASTX660) in Colorectal Cancer.
Crawford et al.
Binucleated human hepatocytes arise through late cytokinetic regression during endomitosis M phase.
Darmasaputra et al.
Correspondence regarding Lung organoids a new frontier in neonatology and paediatric respiratory m
Das and Bhandari
Regulation of endogenous retrovirus-derived regulatory elements by GATA23 and MSX2 in human trophob
Du et al.
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules.
Faure et al.
First-Line Ethics for Human Brain Organoids.
Golemon
MANF Clears Mutant Uromodulin in Human Kidney Organoids of Autosomal Dominant Tubulointerstitial Kid
Gu et al.
Mechanical strain exacerbates Pseudomonas infection in an organoid-based pneumonia-on-a-chip model.
Hoffmann et al.
Reconstituted nascent adhesion condensates drive actin polymerization on supported lipid bilayers.
Hordeichyk et al.
CA19-9 induces microenvironment remodeling in pancreatic ductal adenocarcinoma.
Hsu et al.
Modeling memory B cell responses in a lymphoid organ-chip to evaluate mRNA vaccine boosting.
Jeger-Madiot et al.
Discriminative prediction of mammalian enhancers from DNA sequence.
Lee et al.
Targeting the N-acetyltransferase 10DKK2 axis enhances CD8+ T cell antitumor activity in colorectal
Li et al.
TIMP1 Derived from Mesenchymal Stem Cells Promotes Bladder Cancer Progression by Regulating the Form
Li et al.
Identification of the PhoB Regulon and Role of PhoU in the Phosphate Starvation Response of Caulobac
Lubin et al.
3D printed HAMAGelMAlignosulfonate hydrogel integrating oxygen-releasing and antioxidative modules
Luo et al.
IFITM proteins are key entry factors for porcine epidemic diarrhea coronavirus.
Lv et al.
Fat-intra-body communication system using flexible wearable antennas with human and torso phantom va
Mandal et al.
Endometrial organoid and stromal cultures demonstrate donor-derived cellular origin of the endometri
Meisl et al.
Genetic and Pharmacologic Inhibition of JAK12 Antagonizes Cardiac Fibrosis.
Meng et al.
UPRATF4Noxa pathway overactivation through SERCA2 inhibition or ONC201 treatment combined with ABT
Messaoudi et al.
Ultrahigh-throughput screening of environmental bacteria for proteolytic activity using droplet-base
Nakamura et al.
Controlling Intestinal Organoid Polarity using Synthetic Dynamic Hydrogels Decorated with Laminin-De
Rijns et al.
A CTCF-independent role for cohesin in tissue-specific transcription.
Schmidt et al.
Leveraging Spaceflight to Advance Cardiovascular Research on Earth.
Scott et al.
Multiple Evolutionarily Conserved Domains of Cap2 Are Required for Promoter Recruitment and Iron Hom
Srivastav et al.
Comparison of mutations in human parainfluenza viruses during passage in primary human bronchialtra
Sugimoto et al.
Kelp Culture Enhances Coastal Biogeochemical Cycles by Maintaining Bacterioplankton Richness and Reg
Sun et al.
Rapid activation of p62 body-mediated autophagy in human cells under hyperosmotic stress.
Tamura and Waguri
Nondestructive In-Situ Measurement of Alkaline Phosphatase Activity of Human Intestinal Organoids in
Utagawa et al.
TMPRSS2ERG-directed radiosensitization exploiting DNA repair rewiring in gene fusion-positive pros
Wang and Chinnaiyan
Sequence features and chromatin structure around the genomic regions bound by 119 human transcriptio
Wang et al.
AhR ligands from LGG metabolites promote piglet intestinal ILC3 activation and IL-22 secretion to in
Wang et al.
Type I Interferons Drive the Gastrointestinal Inflammatory Response in a Mouse Model of Parkinson's
Waters et al.
Suppression of antimicrobial peptide expression by ureaplasma species.
Xiao et al.
Proteome-based molecular subtyping and therapeutic target prediction in cervical cancer.
Yang et al.
Recombination alters the receptor binding and furin cleavage site in novel bat-borne HKU5-CoV-2 coro
Yeh et al.
Case Report Personalized treatment in an advanced lung adenocarcinoma patient with EGFR exon 21 L85
Zhang et al.
Filtration-Based Rapid ECM-Hydrogel Elimination Enables Robust MALDI MSI of Intestinal Organoids.
Zhang et al.
Transitions in development - an interview with Natalie Dye.
Response to modulator therapy in a cystic fibrosis patient with a single identified CFTR variant not
Agirtici et al.
Uric acid electrochemical biosensor based on a laser-induced graphene electrode modified with a Hone
Anshori et al.
From bench to bedside the role of gastrointestinal stem cells in health and disease.
Bai et al.
Matrix Stiffness Influences Drug Resistance to Gemcitabine Analog and AZD 1775 Combination in PDAC O
Barajas et al.
Re-evaluation of the concept of basaloid follicular hamartoma associated with naevoid basal cell car
Barbieux et al.
Recapitulating the immune microenvironment in pediatric brain cancer preclinical modeling strategie
Bhargav et al.
Polyamines regulate mitochondrial metabolism essential for intestinal epithelial renewal and wound h
Cairns et al.
Ubiquitin-independent pathway regulates the RIT1-MAPK pathway in chordoma progression.
Chen et al.
Imaging biomineralizing bacteria in their native-state with X-ray fluorescence microscopy.
Chevrier et al.
[Moslosooflavone ameliorates dextran sulfate sodium-induced colitis in mice by suppressing intestina
Chu et al.
Casein Glycomacropeptide Regulates Gene Expression in Intestinal Epithelial Cells Effect of Simulat
Cian et al.
Colon cancer cells evade drug action by enhancing drug metabolism.
Cong et al.
Advancing insights into virus-induced neurodevelopmental disorders through human brain organoid mode
Crawford et al.
STK38-mediated feedback loop regulation of the hedgehog pathway governing tumor heterogeneity in ren
Du et al.
Inflammatory metabolite 7α,25-OHC promotes TIMP1 expression in COVID-19 monocytes through synergy ef
Feng et al.
Transducer Systems Integrated into Organ-on-a-Chip Devices From Detection to Fabrication.
Ferreira et al.
[Drug discovery using iPS cells and in silico model].
Fujiwara and Yoshida
Intracellular Biomacromolecule Delivery by Stimuli-Responsive Protein Vesicles Loaded by Hydrophobic
Gray et al.
A single-cell transcriptomic atlas of human lens epithelium identification and functional insights
Gu et al.
Molecular simulation-aided self-adjuvanting nanoamplifier for cancer photoimmunotherapy.
Gu et al.
Molecular mechanisms underlying glucose-dependent insulinotropic polypeptide secretion in human duod
Guccio et al.
Oleic acid activates TGFβ-Smad3 signaling to promote ovarian cancer progression.
Guo et al.
Hydrogen sulfide preserves intestinal barrier repair function through sulfhydration of RPS20 in expe
He et al.
Highly Specific Miniaturized Fluorescent Monoacylglycerol Lipase Probes Enable Translational Researc
Hentsch et al.
Study on drug sensitivity and clinical application of tumor organoid-based colorectal cancer models.
Hu et al.
[Nodakenin ameliorates TNBS-induced experimental colitis in mice by inhibiting pyroptosis of intesti
Huang et al.
Mechanistic insights into promotion of non-small cell lung cancer by BAG5 using integrative multi-om
Huang et al.
lncRNA, miRNA, and mRNA dynamics in cholangiocyte-to-immature hepatocyte differentiation in liver re
Huang et al.
Generative frame interpolation enhances tracking of biological objects in time-lapse microscopy.
Kaondal et al.
Inertial sensing of water content in tumor spheroids.
Katsikis et al.
Engineering Three-Dimensional Cellular Organization by Regulating Bound Water-Mediated Cell-Substrat
Kawahara et al.
Mouse pancreatic tumor organoids reveal synergistic efficacy of low-dose anticancer drug and radiati
Keepers et al.
Therapeutic Potential of Lactobacillus rhamnosus DS3316 via Cell Apoptosis in Colorectal Cancer.
Lee et al.
Generation of ten human induced pluripotent stem cell lines (hiPSCs) from patients with and without
Lewis et al.
METTL3-dependent m6A RNA methylation suppresses aberrant mammary epithelial differentiation and neop
Li et al.
Structural and Functional Differences in Preterm Tracheal Epithelium Based on Mouse Airway Organoid
Li et al.
Replisomes restrict SMC-mediated DNA-loop extrusion in vivo.
Liao et al.
Replisomes restrict SMC translocation in vivo.
Liao et al.
Development of a senescence-related lncRNA signature in endometrial cancer based on multiple machine
Lin et al.
Reply to An Organoid Model for the Therapeutic Effect of Hyperthermic Intraperitoneal Chemotherapy
Liu and Cai
Structural modification of defective WO(3) by g-C(3)N(4) for photocatalytic gold recovery from non-c
Longchin et al.
Organoids in biliary atresia.
Lui
YY1-induced DDX18 modulates EMT via the AKTmTOR pathway in esophageal cancer a novel therapeutic t
Ma et al.
Linear coupling of patterning systems can have nonlinear effects.
Mahashri et al.
Excretorysecretory products from Hymenolepis nana adult worms alleviate ulcerative colitis in mice
Mou et al.
NLRP3 activation promotes cGASSTING signaling and antitumor immunity by colorectal cancer cells.
Mowat et al.
[Drugs and cellular dynamics in tumor microenvironment using microphysiological systems].
Nashimoto
Single-cell RNA sequencing and machine learning provide candidate drugs against drug-tolerant persis
Nojima et al.
[Frontline in Biliary Excretion of Drugs and Their Evaluation Systems].
Ogihara and Okada
Bat organoid platform revolutionizing zoonotic virus research and pandemic preparedness.
Park et al.
Host S100A6 inhibits ZIKV replication by degrading NS3 through lysosomal pathway.
Peng et al.
Unraveling the Oncogenic Characteristics of the Cytolinker, Plectin, in Esophageal Squamous Cell Car
Qiao et al.
Afadin loss induces breast cancer metastasis through destabilisation of E-cadherin to F-actin linkag
Rätze et al.
Bioengineered Humanoid-on-Chip Platforms Tools for Evaluating the Effects of Environmental Exposure
Saglam-Metiner et al.
Generation and functional characterization of tuft cells in non-human primate pancreatic ducts throu
Sakaguchi et al.
Role of Patient-Derived Tumor Organoids in Advanced Cancer Research.
Sato et al.
[Attempts to Improve Non-clinical Evaluation Predictability by In Vivo Imaging and Microphysiologica
Sato et al.
Unlocking the potential of organopalladium complexes for high-grade serous ovarian cancer therapy.
Scattolin et al.
Occupational and Environmental Exposures Trends in Publications, Diseases, and Experimental Models.
Sert and Yesil-Celiktas
The cGAS‒STING pathway in cancer immunity mechanisms, challenges, and therapeutic implications.
Shen et al.
A human cerebral organoid model of West Nile virus encephalitis shows innate immunocompetency.
Steffen et al.
Calcifying nested stromal-epithelial tumor of the liver Report of two cases revealing novel WT1 mut
Strakova-Peterikova et al.
Synergistic promotion of bone regeneration through co-culture of endothelial cells with mesenchymal
Su et al.
[The potential of neural microphysiological systems (MPS)].
Suzuki
iCAT as an open-source platform for axial rotation and high-resolution imaging of organoids and livi
Svoboda et al.
The people behind the papers - Taishi Fujimura and Isao Tamura.
Tamura and Fujimura
Microdevice for confinement of T-cells on functionalized bio-interfaces.
Trenzinger et al.
Proof of concept for brain organoid-on-a-chip to create multiple domains in forebrain organoids.
Tsai et al.
Multi modal optical coherence tomography flowmetry of organ on chip devices.
Tugberk et al.
Application of Human Liver Organoids for Pharmaceutical Research.
Ueyama-Toba et al.
Lack of biochemical signalling in GelMA leads to polarity reversion in intestinal organoids independ
Vanhove et al.
Epigenetic modulation of RIPK3 by transglutaminase 2-dependent serotonylation of H3K4me3 affects nec
Vecchio et al.
ICAM-1 targeting of nanocarriers in a human blood-brain-barrier-on-a-chip complements in vivo brain
Vigo et al.
Modeling of lung organoid-based fibrosis for testing the sensitivity of anti-fibrotic drugs.
Wang et al.
THSD4 promotes hair growth by facilitating dermal papilla and hair matrix interactions.
Wang et al.
Computer identification of Notch3 in the neurogenic progenitor cells of mammalian early optic vesicl
Watabe et al.
Drug treatment alters performance in a neural microphysiological system of information processing.
Watmuff et al.
Fabrication of a novel porous silicon biomembrane for applications in organ-on-chip technology.
Williams et al.
Novel organoid culture condition modeling fetal-like plasticity in colorectal cancer.
Wu et al.
Specific immune landscape of heatstroke distinguished from sepsis and aseptic inflammation.
Wu et al.
Mechanisms of organotropism in breast cancer and predicting metastasis to distant organs using deep
Xiao et al.
Identification of sinensetin as a selective inhibitor for mitogen-activated protein kinase kinase 6
Xie et al.
Biological interpretation of DNARNA modification by ALKBH proteins and their role in human cancer.
Yang et al.
Patient-derived tumor organoids for cancer immunotherapy culture techniques and clinical applicatio
Yao et al.
Antitumor activity of gilteritinib, an inhibitor of AXL, in human solid tumors.
Zhang et al.
Clonal hematopoiesis of indeterminate potential and risk of autoimmune thyroid disease.
Zhang et al.
Flavivirus NS2A orchestrates reticulophagy to enhance viral pathogenicity.
Zhang et al.
SUMOylation involved in malignant progression of multiple tumors and SENP5 may improve the chemother
Zhang et al.
R406 and its structural analogs reduce SNCAα-synuclein levels via autophagic degradation.
Zhong et al.
Pan-cancer analysis reveals TRA16 as a master regulator of human carcinogenesis.
Zhu et al.
Rapid low-cost assembly of modular microvessel-on-a-chip with benchtop xurography.
Agarwal et al.
Dysfunctional mechanotransduction regulates the progression of PIK3CA-driven vascular malformations.
Aw et al.
THBS1 is a new autosomal recessive non-syndromic hearing impairment gene.
Bharadwaj et al.
Size-related variability of oxygen consumption rates in individual human hepatic cells.
Botte et al.
SNX10 deficiency impairs sensitivity to anti-HER2 antibody-drug conjugates via altering HER2 traffic
Chen et al.
Severe pneumonia caused by Elizabethkingia anophelis combined with Acinetobacter baumannii infection
Cheng et al.
Establishment of an Apical-Out Organoid Model for Directly Assessing the Function of Postbiotics.
Cho et al.
Safety assessment of rat embryonic fraction for in vivo regenerative therapy.
Darsi et al.
Gelsolin regulates intestinal stem cell regeneration and Th17 cellular function.
Du et al.
Effect of the mRNA decapping enzyme scavenger (DCPS) inhibitor RG3039 on glioblastoma.
Duan et al.
Single-Cell Transcriptomic Profiling of Cholangiocyte Organoids Derived from Bile Ducts of Primary S
Frank et al.
Placental microphysiological systems new advances on promising platforms that mimic the microenviro
Gonçalves et al.
Establishment of a human organoid-based evaluation system for assessing interspecies infection risk
Gong et al.
Stress relaxing granular bioprinting materials enable complex and uniform organoid self-organization
Graham et al.
Enzymatic self-assembly of short peptides for cell spheroid formation.
Guo et al.
Genetic analysis of cervical cancer with lymph node metastasis.
He et al.
Inhibitory effects of the combination of rapamycin with gemcitabine plus paclitaxel on the growth of
Jobu et al.
Generative AI for Cell Type-Specific Fluorescence Image Generation of hPSC-derived Cardiac Organoid.
Kandula et al.
EPHA2 Regulates SOX2 during Esophageal Development.
Li et al.
FOXC1 transcriptionally suppresses ABHD5 to inhibit the progression of renal cell carcinoma through
Li et al.
Generation of human hepatobiliary organoids with a functional bile duct from chemically induced live
Li et al.
HDACi combination therapy with IDO1i remodels the tumor microenvironment and boosts antitumor effica
Liang et al.
Construction of in vitro liver-on-a-chip models and application progress.
Liu et al.
Wuzhishan miniature pig-derived intestinal 2D monolayer organoids to investigate the enteric coronav
Liu et al.
ACMSD inhibition corrects fibrosis, inflammation, and DNA damage in MASLDMASH.
Liu et al.
MYO5B gene mutations may promote the occurrence of very early onset inflammatory bowel disease a ca
Lou et al.
Patient-derived organoids of pancreatic ductal adenocarcinoma for subtype determination and clinical
Matsumoto et al.
The multifaceted roles of the transcriptional coactivator TAZ in extravillous trophoblast developmen
Meinhardt et al.
WNT Oncogenic Transcription Requires MYC Suppression of Lysosomal Activity and EPCAM Stabilization i
Mulè et al.
It's good to know what to BACE the specificity of your inhibitors on.
Murray et al.
GZMA suppressed GPX4-mediated ferroptosis to improve intestinal mucosal barrier function in inflamma
Niu et al.
From ex ovo to in vitro xenotransplantation and vascularization of mouse embryonic kidneys in a mic
Oliveira et al.
Exploring cell death mechanisms in spheroid cultures using a novel application of the RIP3-caspase3-
Philippi et al.
Leveraging homologous recombination deficiency for sarcoma Unravelling homologous recombination re
Planas-Paz and Pauli
Temporal single-cell RNA sequencing dataset of gastroesophagus development from embryonic to post-na
Prakash et al.
A gravity-driven tissue chip to study the efficacy and toxicity of cancer therapeutics.
Rafsanjani Nejad et al.
Leveraging Patient-Derived Organoids for Personalized Liver Cancer Treatment.
Rao et al.
Cholangiocyte Organoids in Liver Transplantation; a Comprehensive Review.
Rejas and Junger
PAX2 is Transcriptionally Silenced by a Distinct Mechanism of Epigenetic Reprogramming to Initiate E
Sahoo et al.
Disrupting glioblastoma networks with tumor treating fields (TTFields) in in vitro models.
Schlieper-Scherf et al.
Salmonella infection accelerates postnatal maturation of the intestinal epithelium.
Schlober et al.
Identifying SETBP1 haploinsufficiency molecular pathways to improve patient diagnosis using induced
Shaw et al.
The GTPase RAB6 is required for stem cell maintenance and cell migration in the gut epithelium.
Simonin et al.
Aptamer-guided graphene oxide quantum dots for targeted suicide gene therapy in an organoid model of
Taghizadeh-Tabarsi et al.
A deep-learning model for characterizing tumor heterogeneity using patient-derived organoids.
Takagi et al.
Malignant pleural effusion facilitates the establishment and maintenance of tumor organoid biobank w
Wang et al.
Inhibition of STAT3 alleviates LPS-induced apoptosis and inflammation in renal tubular epithelial ce
Xu et al.
Intestinal organoids to model Salmonella infection and its impact on progenitors.
Yan et al.
Cell Composition Analysis of Matched Salivary Organoid and Adherent Cultures Choose Your Sjögren Di
Yang et al.
Recapitulating hypoxic metabolism in cartilaginous organoids via adaptive cell-matrix interactions e
Yang et al.
Roll-to-roll manufacturing of large surface area PDMS devices, and application to a microfluidic art
Zhang et al.
The application of organoids in cancers associated with pathogenic infections.
Zhang et al.
Gastrointestinal tract organoids as novel tools in drug discovery.
Zhou et al.
Generation and banking of patient-derived glioblastoma organoid and its application in cancer neuros
Zhou et al.
An organ-on-chip device with integrated charge sensors and recording microelectrodes.
Aydogmus et al.
Multifocal optical projection microscopy enables label-free 3D measurement of cardiomyocyte cluster
Belay et al.
Electrochemical control of bone microstructure on electroactive surfaces for modulation of stem cell
Cao et al.
A novel label-free electrochemical immunosensor for the detection of heat shock protein 70 of lung a
Chen et al.
Charting and probing the activity of ADARs in human development and cell-fate specification.
Dailamy et al.
Recent advances in lab-on-a-chip systems for breast cancer metastasis research.
Firatligil-Yildirir et al.
[Development of Microphysiological Systems (MPSs) Based on Microfluidic Technology for Drug Discover
Kimura
Openable artificial intestinal tract device integrated with a permeable filter for evaluating drug p
Konishi et al.
Unsupervised domain adaptation methods for cross-species transfer of regulatory code signals.
Latyshev et al.
Improved production of β-carotene in light-powered Escherichia coli by co-expression of Gloeobacter
Lee et al.
Inner Ear Multiple Primary Cell Type Detection System.
Li et al.
High autophagic vesicle content marks facultative stem cells of the gut.
Parham et al.
Super-Resolution-Chip an in-vitro platform that enables super-resolution microscopy of co-cultures
Sade et al.
Soft robotic patterning of liquids.
Sasso et al.
Electrochemical control of bone microstructure on electroactive surfaces for modulation of stem cells and bone tissue engineering
Cao et al.
Inhibition of UTXKDM6A improves recovery of spinal cord injury by attenuating BSCB permeability and
Xie et al.
An essential role for the Ino80 chromatin remodeling complex in regulation of gene expression during
Zahedi et al.
Activation and Switching of Supramolecular Chemical Signals in Multi-Output Microfluidic Devices.
Bezrukov and Galyametdinov
Continous, non-invasive monitoring of oxygen consumption in a parallelized microfluidic in vitro sys
Busche et al.
A Comparative Evaluation of Magnetorheological Micropump Designs.
Cesmeci et al.
Brain organoid-on-chip system to study the effects of breast cancer derived exosomes on the neurodev
Cui et al.
PTBP3 mediates TGF-β-induced EMT and metastasis of lung adenocarcinoma.
Dong et al.
Integrating an aerosolized drug delivery device with conventional static cultures and a dynamic airw
Karra et al.
A Multi-Organ-on-Chip Approach to Investigate How Oral Exposure to Metals Can Cause Systemic Toxicit
Koning et al.
Exploring Endothelial Expansion on a Chip.
Konopka et al.
An in silico Model of T Cell Infiltration Dynamics Based on an Advanced in vitro System to Enhance P
Lewin et al.
Microfluidic Organ-on-a-Chip System for Disease Modeling and Drug Development.
Li et al.
Design and Fabrication of a Liver-on-a-chip Reconstructing Tissue-tissue Interfaces.
Liu et al.
The physiological interactome of TCR-like antibody therapeutics in human tissues.
Marrer-Berger et al.
A genosensor for detecting single-point mutations in dendron chips after blocked recombinase polymer
Martorell et al.
A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mou
Ni et al.
Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules i
Ni et al.
Nanofiber self-consistent additive manufacturing process for 3D microfluidics.
Qiu et al.
Intestinal Permeability of Drugs in Caco-2 Cells Cultured in Microfluidic Devices.
Sasaki et al.
Multiomics analysis reveals that hepatocyte nuclear factor 1β regulates axon guidance genes in the d
Shao et al.
Efficient single-component white light emitting diodes enabled by lanthanide ions doped lead halide
Sun et al.
Thyroid Hormone Receptor α Controls the Hind Limb Metamorphosis by Regulating Cell Proliferation and
Tanizaki et al.
JAK2 V617f in chronic myeloid leukemia driving force or passive bystander
Tarantini et al.
Electrochemical Glue for Binding Chitosan-Alginate Hydrogel Fibers for Cell Culture.
Utagawa et al.
Colorectal Cancer Chemotherapy Drug Bevacizumab May Induce Muscle Atrophy Through CDKN1A and TIMP4.
Xu et al.
Rapid AC Electrokinetic Micromixer with Electrically Conductive Sidewalls.
Yang et al.
Pancreatic islet organoids-on-a-chip how far have we gone
Yin et al.
Roles of Polycomb Complexes in the Reconstruction of 3D Genome Architecture during Preimplantation E
Yu et al.
A Dual-Channel Microfluidic Chip for Single Tobacco Protoplast Isolation and Dynamic Capture.
Zhang et al.
Generation of functional fat organoid from rat superficial fascia.
Zhang et al.
Collagen I Based Enzymatically Degradable Membranes for Organ-on-a-Chip Barrier Models
Design and Fabrication of Low-Cost Microfluidic Chips and Microfluidic Routing System for Reconfigur
Abu-Dawas et al.
Ion Conductance-Based Perfusability Assay of Vascular Vessel Models in Microfluidic Devices.
Akasaka et al.
Collagen I Based Enzymatically Degradable Membranes for Organ-on-a-Chip Barrier Models.
Arik et al.
Microbiota-Host Immunity Communication in Neurodegenerative Disorders Bioengineering Challenges for
Boeri et al.
Surface Modification of PDMS-Based Microfluidic Devices with Collagen Using Polydopamine as a Spacer
Dabaghi et al.
The androgen receptorfilamin A complex as a target in prostate cancer microenvironment.
Di Donato et al.
Aspirin Rescues Wnt-Driven Stem-like Phenotype in Human Intestinal Organoids and Increases the Wnt A
Dunbar et al.
Microfluidic Platforms for High-Throughput Pancreatic Ductal Adenocarcinoma Organoid Culture and Dru
Geyer and Queiroz
Identification of lysosome-targeting drugs with anti-inflammatory activity as potential invasion inh
Hansen et al.
[Generation of Multiple Ocular Lineages from Human Pluripotent Stem Cells and Its Application to Reg
Hayashi
High Yap and Mll1 promote a persistent regenerative cell state induced by Notch signaling and loss o
Heuberger et al.
Low-viscosity matrix suspension culture enables scalable analysis of patient-derived organoids and t
Hirokawa et al.
Progress towards non-small-cell lung cancer models that represent clinical evolutionary trajectories
Hynds et al.
ROCK inhibitors enhance the production of large lipid-enriched 3D organoids of 3T3-L1 cells.
Ida et al.
Mechanisms and regulation underlying membraneless organelle plasticity control.
Ismail et al.
ADCK1 activates the β-cateninTCF signaling pathway to promote the growth and migration of colon can
Ji et al.
Organ-on-a-chip technology for nanoparticle research.
Kang et al.
Engineering the Cellular Microenvironment of Post-infarct Myocardium on a Chip.
Khalil and McCain
Drug Evaluation Based on a Multi-Channel Cell Chip with a Horizontal Co-Culture.
Kim et al.
Mimicking and surpassing the xenograft model with cancer-on-chip technology.
Komen et al.
Cell and tissue system capable of automated culture, stimulation, and monitor with the aim of feedba
Konishi et al.
Fetal liver hematopoiesis from development to delivery.
Lewis et al.
Orphan Nuclear Receptor RORγ Modulates the Genome-Wide Binding of the Cholesterol Metabolic Genes du
Li et al.
Patient-derived organoid (PDO) platforms to facilitate clinical decision making.
Liu et al.
Rapid Fabrication of Microfluidic Devices for Biological Mimicking A Survey of Materials and Biocom
Ma et al.
Microfluidic chips provide visual access to in situ soil ecology.
Mafla-Endara et al.
Deacetylation of HSC70-4 Promotes Bombyx mori Nucleopolyhedrovirus Proliferation via Proteasome-Medi
Mao et al.
Are bacteria claustrophobic The problem of micrometric spatial confinement for the culturing of mic
Molinaro et al.
Comprehensive Analysis of microRNA Profiles in Organoids Derived from Human Colorectal Adenoma and C
Nagai et al.
Splicing regulation in brain and testis common themes for highly specialized organs.
Naro et al.
CD73 facilitates EMT progression and promotes lung metastases in triple-negative breast cancer.
Petruk et al.
Identifying subpopulations in multicellular systems by quantitative chemical imaging using label-fre
Pope et al.
Transforming a well into a chip A modular 3D-printed microfluidic chip.
Rauti et al.
Microfluidics Integration into Low-Noise Multi-Electrode Arrays.
Ribeiro et al.
Design and fabrication of a vigorous cavitation-on-a-chip device with a multiple microchannel conf
Rokhsar Talabazar et al.
Facile Patterning of Thermoplastic Elastomers and Robust Bonding to Glass and Thermoplastics for Mic
Schneider et al.
Evidence that polyploidy in esophageal adenocarcinoma originates from mitotic slippage caused by def
Scott et al.
Coculture with hiPS-derived intestinal cells enhanced human hepatocyte functions in a pneumatic-pres
Shinohara et al.
Depletion of Trp53 and Cdkn2a Does Not Promote Self-Renewal in the Mammary Gland but Amplifies Proli
van Weele et al.
Porcine ZBED6 regulates growth of skeletal muscle and internal organs via multiple targets.
Wang et al.
ECM-based molecular subtypes define prognostic, EMT status, and therapeutic diversity in IDH-mutant
Wei et al.
Evaluation of the Effects of Solvents Used in the Fabrication of Microfluidic Devices on Cell Cultur
Wen et al.
Rho-Kinase 12 Inhibition Prevents Transforming Growth Factor-β-Induced Effects on Pulmonary Remodel
Wu et al.
A Microfluidic Hanging-Drop-Based Islet Perifusion System for Studying Glucose-Stimulated Insulin Se
Wu Jin et al.
Exogenous Coronavirus Interacts With Endogenous Retrotransposon in Human Cells.
Yin et al.
A modular microfluidic system based on a multilayered configuration to generate large-scale perfusab
Yue et al.
Exploration of the typical features of tubulovillous adenoma using in-depth quantitative proteomics
Zhang et al.
Review on the Vascularization of Organoids and Organoids-on-a-Chip.
Zhao et al.
Lipidomic, Transcriptomic, and BSA-660K Single Nucleotide Polymorphisms Profiling Reveal Characteris
Zheng et al.
Cancer cells grown in 3D under fluid flow exhibit an aggressive phenotype and reduced responsiveness
Azimi et al.
Fighting COVID-19 With Lung-Chips.
Bates et al.
Analysis of barotactic and chemotactic guidance cues on directional decision-making of Dictyostelium
Belotti et al.
Bioinspired cilia arrays with programmable nonreciprocal motion and metachronal coordination.
Dong et al.
Pharmacokinetic Analysis of EpithelialEndothelial Cell Barriers in Microfluidic Bilayer Devices wit
Frost et al.
Epidemiology of hepatitis E virus infection in a cohort of 4023 immunocompromised patients.
Harritshøj et al.
Modular Microphysiological System for Modeling of Biologic Barrier Function.
Ishahak et al.
Inhibition of tRNA Gene Transcription by the Immunosuppressant Mycophenolic Acid.
Jurkiewicz et al.
Aging and leukemic evolution of hematopoietic stem cells under various stress conditions.
Kurosawa and Iwama
PLGA NanofiberPDMS Microporous Composite Membrane-Sandwiched Microchip for Drug Testing.
Li et al.
The Influence of Chronic Liver Diseases on Hepatic Vasculature A Liver-on-a-chip Review.
Ozkan et al.
OOCHIP Compartmentalized Microfluidic Perfusion System with Porous Barriers for Enhanced Cell-Cell
Ramadan et al.
Development of Microplatforms to Mimic the In Vivo Architecture of CNS and PNS Physiology and Their
Saliba et al.
A pharmacokinetic-pharmacodynamic model based on multi-organ-on-a-chip for drug-drug interaction stu
Shinha et al.
Evidence that AGL17 is a significant downstream target of CLF in floral transition control.
Shu et al.
Epigenetic regulation of neuronal cell specification inferred with single cell Omics data.
Yin et al.
The Stress-Chip A microfluidic platform for stress analysis in Caenorhabditis elegans.
Banse et al.
Super-Low Dose Lipopolysaccharide Dysregulates Neutrophil Migratory Decision-Making.
Boribong et al.
Engineered Liver-on-a-Chip Platform to Mimic Liver Functions and Its Biomedical Applications A Revi
Deng et al.
Permeability of EpithelialEndothelial Barriers in Transwells and Microfluidic Bilayer Devices.
Frost et al.
A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in P
Gawrieh et al.
Gold NanowiresFibrin Nanostructure as Microfluidics Platforms for Enhancing Stem Cell Differentiati
Hashemzadeh et al.
Krüppel-like factor 5 (Klf5) regulates expression of mouse T1R1 amino acid receptor gene (Tas1r1) in
Hirata et al.
Hemostasis-On-a-Chip Impedance Spectroscopy Meets Microfluidics for Hemostasis Evaluation.
Karimi et al.
Cell contact and Nf2Merlin-dependent regulation of TEAD palmitoylation and activity.
Kim and Gumbiner
Characterization of four functional biocompatible pressure-sensitive adhesives for rapid prototyping
Kratz et al.
Butyrate Regulates COVID-19-Relevant Genes in Gut Epithelial Organoids From Normotensive Rats.
Li et al.
Study Effects of Drug Treatment and Physiological Physical Stimulation on Surfactant Protein Express
Lin et al.
HDACs control RUNX2 expression in cancer cells through redundant and cell context-dependent mechanis
Manzotti et al.
Genomic architecture of Shh-dependent cochlear morphogenesis.
Muthu et al.
Endothelial Cell Activation in an Embolic Ischemia-Reperfusion Injury Microfluidic Model.
Nemcovsky Amar et al.
A promising platform for predicting toxicity.
Ochoa de Olza
Methylation of RCAN1.4 mediated by DNMT1 and DNMT3b enhances hepatic stellate cell activation and li
Pan et al.
Testosterone induces renal tubular epithelial cell death through the HIF-1αBNIP3 pathway.
Peng et al.
BINDER computationally inferring a gene regulatory network for Mycobacterium abscessus.
Staunton et al.
Reusable Standardized Universal Interface Module (RSUIM) for Generic Organ-on-a-Chip Applications.
Sun et al.
Ex vivo Dynamics of Human Glioblastoma Cells in a Microvasculature-on-a-Chip System Correlates with
Xiao et al.
Genome-wide association study reveals new loci for yield-related traits in Sichuan wheat germplasm u
Ye et al.
Empowering the detection of ChIP-seq basic peaks (bPeaks) in small eukaryotic genomes with a web u
Denecker and Lelandais
Collagen and fibronectin surface modification of nanoporous anodic alumina and macroporous silicon f
Formentín et al.
Incorporating mechanical strain in organs-on-a-chip Lung and skin.
Guenat and Berthiaume
Extended IgE profile based on an allergen macroarray a novel tool for precision medicine in allergy
Heffler et al.
A microfluidic method to measure bulging heights for bulge testing of polydimethylsiloxane (PDMS) an
Huang et al.
Developmentally inspired human 'organs on chips'.
Ingber
The application of capillary electrophoresis, mass spectrometry and Brdicka reaction in human and ra
Kepinska et al.
Profiling proliferative cells and their progeny in damaged murine hearts.
Kretzschmar et al.
Implementation of a dynamic intestinal gut-on-a-chip barrier model for transport studies of lipophil
Kulthong et al.
[Organs-on-chips dedicated to oncology].
Molla and Coll
3D printed microchannels for sub-nL NMR spectroscopy.
Montinaro et al.
Flat and microstructured polymeric membranes in organs-on-chips.
Pasman et al.
Transistor in a tube A route to three-dimensional bioelectronics.
Pitsalidis et al.
Development of a Microfluidic System Comprising Dialysis and Secretion Components for a Bioassay of
Sakuta et al.
Recent Progress in the Development of Microfluidic Vascular Models.
Sato and Sato
GenoGAM 2.0 scalable and efficient implementation of genome-wide generalized additive models for gi
Stricker et al.
Ultrahigh-throughput functional profiling of microbiota communities.
Terekhov et al.
Bioengineered Systems and Designer Matrices That Recapitulate the Intestinal Stem Cell Niche.
Wang et al.
Biomimetic enzyme cascade reaction system in microfluidic electrospray microcapsules.
Wang et al.
A perfused human blood-brain barrier on-a-chip for high-throughput assessment of barrier function an
Wevers et al.
The coding and noncoding transcriptome of Neurospora crassa.
Cemel et al.
Microdevice Platform for In Vitro Nervous System and Its Disease Model.
Choi et al.
Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes.
Desai et al.
Optical Tracking and Digital Quantification of Beating Behavior in Bioengineered Human Cardiac Organ
Devarasetty et al.
Genetic interaction mapping with microfluidic-based single cell sequencing.
Haliburton et al.
Increased drug resistance of meticillin-resistant Staphylococcus aureus biofilms formed on a mouse d
Jimi et al.
Pumpless microfluidic system driven by hydrostatic pressure induces and maintains mouse spermatogene
Komeya et al.
3D Printing, Ink Casting and Micromachined Lamination (3D PICLμM) A Makerspace Approach to the Fabr
Kundu et al.
Microtechnology-Based Multi-Organ Models.
Lee and Sung
Wavy membranes and the growth rate of a planar chemical garden Enhanced diffusion and bioenergetics
Ding et al.
A novel microfluidic model can mimic organ-specific metastasis of circulating tumor cells.
Kong et al.
Arabidopsis Motif Scanner.
Mele
A transgenerational role of the germline nuclear RNAi pathway in repressing heat stress-induced tran
Ni et al.
Simultaneous Real-Time Monitoring of Oxygen Consumption and Hydrogen Peroxide Production in Cells Us
Prasad et al.
Human cardiac fibroblasts adaptive responses to controlled combined mechanical strain and oxygen cha
Ugolini et al.
Wideband Fully-Programmable Dual-Mode CMOS Analogue Front-End for Electrical Impedance Spectroscopy.
Valente and Demosthenous
Two-Component Signaling System VgrRS Directly Senses Extracytoplasmic and Intracellular Iron to Cont
Wang et al.
Molecular Differences in Hepatic Metabolism between AA Broiler and Big Bone Chickens A Proteomic St
Zheng et al.
Single-cell measurement of red blood cell oxygen affinity.
Di Caprio et al.
Transposons play an important role in the evolution and diversification of centromeres among closely
Gao et al.
The recently identified modifier of murine metastable epialleles, Rearranged L-Myc Fusion, is involv
Harten et al.
Smooth muscle-like tissue constructs with circumferentially oriented cells formed by the cell fiber
Hsiao et al.
Long-term ex vivo maintenance of testis tissues producing fertile sperm in a microfluidic device.
Komeya et al.
Highly sensitive and selective sugar detection by terahertz nano-antennas.
Lee et al.
Clinical Application of Variation in Replication Kinetics During Episodes of Post-transplant Cytomeg
Lodding et al.
Detection of gene annotations and protein-protein interaction associated disorders through transitiv
Masseroli et al.
The GATA transcription factor GtaC regulates early developmental gene expression dynamics in Dictyos
Santhanam et al.
Conditioned medium from umbilical cord mesenchymal stem cells induces migration and angiogenesis.
Shen et al.
Interaction of Yna1 and Yna2 Is Required for Nuclear Accumulation and Transcriptional Activation of
Silvestrini et al.
A High Performance Delta-Sigma Modulator for Neurosensing.
Xu et al.
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle.
Baes et al.
Enhanced regulatory sequence prediction using gapped k-mer features.
Ghandi et al.
The comprehensive transcriptional analysis in Caenorhabditis elegans by integrating ChIP-seq and gen
He et al.
Timing of circadian genes in mammalian tissues.
Korenčič et al.
Pou5f1Oct4 promotes cell survival via direct activation of mych expression during zebrafish gastrul
Kotkamp et al.
Application of an acoustofluidic perfusion bioreactor for cartilage tissue engineering.
Li et al.
Reconstruction of the gene regulatory network involved in the sonic hedgehog pathway with a potentia
Liu et al.
PITX1, a specificity determinant in the HIF-1α-mediated transcriptional response to hypoxia.
Mudie et al.
Shared transcription factors contribute to distinct cell fates.
Ng et al.
High shear resistance of insect cells the basis for substantial improvements in cell culture proces
Strobl et al.
Tissue-engineered microenvironment systems for modeling human vasculature.
Tourovskaia et al.
CCAATenhancer-binding protein β regulates the repression of type II collagen expression during the
Ushijima et al.
The emerging genomics and systems biology research lead to systems genomics studies.
Yang et al.
Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments
Benzine et al.
Towards a three-dimensional microfluidic liver platform for predicting drug efficacy and toxicity in
Bhushan et al.
An automated microfluidic multiplexer for fast delivery of C. elegans populations from multiwells.
Ghorashian et al.
RECOT a tool for the coordinate transformation of next-generation sequencing reads for comparative
Izawa and Sese
Human induced pluripotent stem cell-based microphysiological tissue models of myocardium and liver f
Mathur et al.
Active enhancer positions can be accurately predicted from chromatin marks and collective sequence m
Podsiadło et al.
Building a better model of the retina.
Radisic
The National Institutes of Health Microphysiological Systems Program focuses on a critical challenge
Sutherland et al.
Comprehensive characterization of erythroid-specific enhancers in the genomic regions of human Krüpp
Xiong et al.
Predicting tissue specific transcription factor binding sites.
Zhong et al.
On-chip manipulation of single microparticles, cells, and organisms using surface acoustic waves.
Ding et al.
The transcription factor Erg controls endothelial cell quiescence by repressing activity of nuclear
Dryden et al.
COPS detecting co-occurrence and spatial arrangement of transcription factor binding motifs in geno
Ha et al.
A normalization strategy for comparing tag count data.
Kadota et al.
Orphan nuclear receptor chicken ovalbumin upstream promoter-transcription factor II (COUP-TFII) prot
Lee et al.
Jarid2 (Jumonji, AT rich interactive domain 2) regulates NOTCH1 expression via histone modification
Mysliwiec et al.
Transcriptional repressor PRR5 directly regulates clock-output pathways.
Nakamichi et al.
A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast.
Radman-Livaja et al.
MAnorm a robust model for quantitative comparison of ChIP-Seq data sets.
Shao et al.
An extracytoplasmic function sigma factor-mediated cell surface signaling system in Pseudomonas syri
Markel et al.
Swimming direction reversal of flagella through ciliary motion of mastigonemes.
Namdeo et al.
Osteoblast-specific transcription factor Osterix (Osx) is an upstream regulator of Satb2 during bone
Tang et al.
Perfused multiwell plate for 3D liver tissue engineering.
Domansky et al.
Induction of micronuclei in germinating onion seed root tip cells irradiated with high energy heavy
Takatsuji et al.
Genome sequence of the cellulosome-producing mesophilic organism Clostridium cellulovorans 743B.
Tamaru et al.
Label-Free Analysis and Sorting of Microalgae and Cyanobacteria in Microdroplets by Intrinsic Chloro
Best et al.
Apical Medium Flow Influences the Morphology and Physiology of Human Proximal Tubular Cells in a Mic
Specioso et al.
Bifidobacterium dentium-derived y-glutamylcysteine suppresses ER-mediated goblet cell stress and red
Engevik et al.
LASAGNA-Search an integrated web tool for transcription factor binding site search and visualizatio
Lee and Huang
Enabling out-of-body experiences for living organs.
Ingber


